PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110193.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 383aa    MW: 43759.8 Da    PI: 6.4663
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix859.3e-2780174185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+++v++Li+a+++++++++ +          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  XP_009110193.1  80 KWTDKMVKLLITAVSYIGDDSSMDGggrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVENPKLLDSI 174
                     7**************8888888643344556677**********************************************669999999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2478201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDGKLPQGVA VRGGASSYGG FDLQGPLSQH LQGLPFTMVS GQTCGHHLSE QHKGERESDD  60
DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGGRRKF AALQKKGKWK  120
SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDILGRGT SCQVVENPKL LDSIGYLNDK  180
EKDDVRKIMS SKQLFYEEMC SYHNGNRLHL PHDFALQRSL QVALRSRDDQ HRVEDLDDED  240
HDGEGDEHDD DVDHGDCRVV GGPLKKARES HSHSHEGVDH QGHVNSLECN KVTLALPQGG  300
AESGRSASVQ KQWIESRTLQ LEEQKLQIQV ELLELEKQRF RWERFSKKRD QELERMRMEN  360
ERMKLENDRM GLELKQRVLG VEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458504e-89AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913784e-89AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026844e-89CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F44e-89AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110193.10.0PREDICTED: uncharacterized protein LOC103835755
RefseqXP_013708471.10.0PREDICTED: uncharacterized protein LOC106412126
RefseqXP_013708472.10.0PREDICTED: uncharacterized protein LOC106412126
RefseqXP_013722062.10.0PREDICTED: uncharacterized protein LOC106425887
RefseqXP_013722063.10.0PREDICTED: uncharacterized protein LOC106425887
TrEMBLM4DIV20.0M4DIV2_BRARP; Uncharacterized protein
STRINGBra016429.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-180sequence-specific DNA binding transcription factors